LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-345-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195061-195080
0.010
9
9mer
167301-167314
0.009
1
8mer
221826-221838
0.008
1
8mer
191255-191271
0.007
6
8mer
255878-255900
0.006
Not Conserved
7mer
189747-189767
0.006
2
7mer
5856-5880
0.005
1
7mer
19074-19098
0.005
1
8mer
252335-252356
0.004
1
8mer
38632-38654
0.004
2
6mer
266996-267013
0.004
0
7mer
39455-39474
0.004
1
7mer
88447-88469
0.004
1
7mer
175760-175775
0.004
1
7mer
127966-127987
0.004
0
8mer
257021-257042
0.003
1
7mer
94295-94317
0.003
1
7mer
153128-153143
0.003
1
7mer
61697-61714
0.003
1
6mer
184536-184548
0.003
2
6mer
114674-114689
0.003
10
6mer
266737-266754
0.003
1
7mer
46212-46228
0.003
0
6mer
135504-135527
0.002
3
9mer
217308-217321
0.002
1
7mer
61375-61399
0.002
1
7mer
214898-214916
0.002
1
7mer
75515-75532
0.002
0
6mer
994-1009
0.002
0
6mer
92411-92426
0.002
3
6mer
19958-19971
0.002
2
6mer
181603-181628
0.002
3
6mer
219267-219284
0.002
0
7mer
62371-62393
0.002
0
6mer
98412-98436
0.002
3
6mer
155349-155358
0.002
0
6mer
55707-55732
0.002
1
6mer
265246-265270
0.002
4
6mer
200758-200781
0.002
1
6mer
169793-169818
0.002
1
6mer
63258-63285
0.002
1
6mer
46706-46725
0.002
2
8mer+wobble
199822-199841
0.001
1
6mer
3168-3187
0.001
3
6mer
182724-182748
0.001
6
6mer
96440-96459
0.001
2
6mer
254465-254491
0.001
3
6mer
182182-182204
0.001
3
6mer
47845-47856
0.001
1
6mer
23944-23961
0.001
1
6mer
162267-162288
0.001
3
6mer
199383-199405
0.001
3
6mer
176888-176914
0.001
0
6mer
17053-17067
0.001
1
6mer
107240-107259
0.001
0
6mer
259147-259167
0.001
0
6mer
188130-188148
0.001
1
6mer
252909-252927
0.001
1
6mer
78949-78975
0.001
1
6mer
44182-44194
0.001
1
6mer
208489-208511
0.001
4
6mer
228442-228464
0.001
1
6mer
240742-240768
0.001
1
6mer
167812-167837
0.001
0
6mer
244854-244881
0.001
0
6mer
78346-78359
0.001
0
6mer
32419-32445
0.001
0
7mer
244907-244923
0.001
0
6mer
55375-55391
0.001
0
6mer
175907-175922
0.001
1
6mer
159541-159566
0.001
1
6mer
92716-92741
0.001
0
6mer
212781-212807
0.001
0
6mer
166982-167003
0.001
1
6mer
260918-260939
0.001
0
6mer
116709-116734
0.001
2
6mer
215708-215720
0.001
2
6mer
88734-88760
0.001
0
6mer
59835-59855
0.001
0
6mer
70018-70042
0.001
0
6mer
226923-226947
0.001
1
6mer
134011-134031
0.001
0
6mer
9574-9590
0.001
1
6mer
214599-214619
0.001
1
6mer
50920-50943
0.001
0
6mer
228585-228607
0.001
2
6mer
216221-216239
0.001
1
6mer
175921-175945
0.001
4
6mer
118806-118833
0.001
2
6mer
120211-120237
0.001
2
6mer
262998-263013
0.001
0
6mer
234737-234763
0.001
0
6mer
136545-136567
0.001
0
6mer
226965-226989
0.001
2
6mer
215083-215096
0.001
0
6mer
199394-199414
0.000
1
6mer
215083-215100
0.000
0
7mer
265289-265312
0.000
0
RP11-333E1.2
hsa-miR-345-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575056
Biotype: lincRNA
Gene id: ENSG00000263164
Gene Name: RP11-333E1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-467
0.075
0
9mer
433-458
0.059
0
CTD-2008P7.1
hsa-miR-345-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2488-2514
0.044
1
8mer
2363-2389
0.022
0
8mer
1872-1898
0.021
1
8mer
1748-1774
0.012
0
7mer
2621-2638
0.009
0
7mer
2005-2022
0.006
0
6mer
1191-1212
0.006
1
6mer
1636-1657
0.003
0
6mer
1518-1539
0.002
0
RP11-475A13.2
hsa-miR-345-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-137
0.084
1
7mer
213-229
0.040
1
RP11-94L15.2
hsa-miR-345-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5699-5724
0.066
3
7mer
130-150
0.014
2
8mer
2252-2277
0.010
0
7mer
4489-4506
0.004
2
RP11-24M17.4
hsa-miR-345-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000623240
Biotype: TEC
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1244-1262
0.094
1
XLOC_001856
hsa-miR-345-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004018
Biotype: transcript isomorph
Gene id: XLOC_001856
Gene Name: XLOC_001856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-325
0.074
8
7mer
319-338
0.015
6
RP11-513O17.2
hsa-miR-345-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521132
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-151
0.089
1
XLOC_010575
hsa-miR-345-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021974
Biotype: transcript isomorph
Gene id: XLOC_010575
Gene Name: XLOC_010575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-149
0.079
3
6mer
435-448
0.005
2
6mer
1363-1386
0.002
0
RP11-385J1.2
hsa-miR-345-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000421498
Biotype: antisense
Gene id: ENSG00000237978
Gene Name: RP11-385J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-335
0.077
6
KCNQ1OT1
hsa-miR-345-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90283-90308
0.005
1
7mer
80877-80902
0.004
2
7mer
90679-90700
0.004
1
7mer
90238-90262
0.003
1
7mer
65317-65335
0.003
2
7mer
68861-68879
0.003
1
8mer
90381-90404
0.003
2
7mer
61388-61397
0.003
1
6mer
40935-40939
0.003
0
7mer
66620-66638
0.003
4
7mer
75620-75628
0.003
0
7mer
59843-59860
0.003
0
8mer
37761-37782
0.002
0
7mer
67347-67358
0.002
2
6mer
13512-13530
0.002
0
6mer
91051-91076
0.002
0
6mer
23901-23917
0.002
1
6mer
46391-46410
0.002
1
6mer
19799-19824
0.002
1
6mer
12558-12578
0.002
1
6mer
89757-89771
0.002
1
6mer
85817-85838
0.002
2
6mer
75234-75257
0.001
2
6mer
63218-63243
0.001
1
6mer
43717-43733
0.001
4
6mer
37109-37132
0.001
0
6mer
82960-82975
0.001
0
6mer
46801-46813
0.001
0
6mer
78070-78078
0.001
1
6mer
52369-52389
0.001
1
6mer
65185-65209
0.001
1
6mer
64810-64829
0.001
1
6mer
64548-64559
0.001
0
6mer
78664-78680
0.001
1
6mer
90535-90555
0.001
2
6mer
62576-62594
0.001
2
6mer
37641-37660
0.001
0
8mer+mismatch
77515-77539
0.001
0
6mer
85735-85760
0.000
Not Conserved
FAM66C
hsa-miR-345-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540566
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-388
0.076
0
XLOC_008077
hsa-miR-345-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016941
Biotype: transcript isomorph
Gene id: XLOC_008077
Gene Name: XLOC_008077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-44
0.067
9
6mer
1513-1529
0.004
0
6mer
104-126
0.004
3
LINC00892
hsa-miR-345-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454385
Biotype: antisense
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-44
0.067
9
6mer
104-126
0.004
3
LINC00152
hsa-miR-345-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409054
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-48
0.070
7
AC006548.28
hsa-miR-345-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84180-84199
0.009
1
6mer
235-254
0.004
1
7mer
17745-17768
0.004
1
7mer
3885-3908
0.003
1
7mer
17328-17345
0.002
1
7mer
9323-9340
0.002
1
6mer
6257-6279
0.002
7
8mer
43152-43174
0.002
0
6mer
64365-64381
0.002
0
6mer
47229-47252
0.002
Not Conserved
6mer
29802-29822
0.002
0
7mer
50975-50980
0.002
Not Conserved
6mer
3171-3194
0.002
2
6mer
24183-24206
0.002
3
6mer
4277-4300
0.002
3
8mer
39753-39772
0.002
0
6mer
58620-58634
0.001
1
6mer
22541-22566
0.001
1
6mer
25853-25867
0.001
1
6mer
40789-40800
0.001
1
6mer
69221-69235
0.001
Not Conserved
6mer
11073-11096
0.001
1
6mer
14571-14580
0.001
1
6mer
33502-33526
0.001
1
6mer
19659-19677
0.001
5
6mer
5862-5886
0.001
0
6mer
29667-29691
0.001
1
6mer
24529-24553
0.001
0
6mer
4121-4146
0.001
1
6mer
60869-60894
0.001
1
6mer
9900-9922
0.001
1
6mer
44712-44736
0.001
1
6mer
25624-25648
0.001
1
6mer
16761-16778
0.001
1
6mer
60053-60077
0.001
1
6mer
48566-48585
0.001
Not Conserved
8mer+mismatch
65522-65548
0.001
1
6mer
45425-45450
0.001
Not Conserved
6mer
19612-19636
0.001
1
6mer
29787-29803
0.000
0
6mer
38316-38338
0.000
0
8mer+wobble
25608-25628
0.000
0
8mer+wobble
45409-45429
0.000
Not Conserved
ZBED3-AS1
hsa-miR-345-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513406
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-568
0.055
2
7mer
629-645
0.008
1
6mer
640-653
0.004
0
XLOC_001373
hsa-miR-345-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003589
Biotype: transcript isomorph
Gene id: XLOC_001373
Gene Name: XLOC_001373
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-58
0.067
3
XLOC_009651
hsa-miR-345-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021052
Biotype: transcript isomorph
Gene id: XLOC_009651
Gene Name: XLOC_009651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-121
0.066
1
RP11-513O17.2
hsa-miR-345-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520929
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-159
0.066
1
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